Please use this identifier to cite or link to this item: http://cuir.car.chula.ac.th/handle/123456789/61884
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dc.contributor.authorC. Puttipanyalears-
dc.contributor.authorA. Arayataweegool-
dc.contributor.authorK. Chalertpet-
dc.contributor.authorP. Rattanachayoto-
dc.contributor.authorP. Mahattanasakul-
dc.contributor.authorN. Tangjaturonsasme-
dc.contributor.authorVirachai Kerekhanjanarong-
dc.contributor.authorApiwat Mutirangura-
dc.contributor.authorN. Kitkumthorn-
dc.contributor.otherChulalongkorn University. Faculty of Medicine-
dc.date.accessioned2019-05-16T09:07:11Z-
dc.date.available2019-05-16T09:07:11Z-
dc.date.issued2018-08-06-
dc.identifier.citationBMC Cancer. Vol.18, Article No. 786 (2018), 9 pagesen_US
dc.identifier.issn1471-2407-
dc.identifier.urihttp://cuir.car.chula.ac.th/handle/123456789/61884-
dc.description.abstractBackground : The incidence of oral squamous cell carcinoma (OSCC) continues to increase each year. Clinical examination and biopsy usually detect OSCC at an advanced stage that is difficult to treat, leading to poor prognosis. DNA methylation pattern is tissue specific and has emerged as a biomarker for the detection of cancers of tissue origin. Herein, we aimed to discover a novel site-specific methylation marker for OSCC. Methods : We selected OSCC datasets analyzed using the IlluminaHumanMethylation27 BeadChip from the Gene Expression Omnibus repository of the National Center for Biotechnology Information using a bioinformatics approach. From 27,578 CG dinucleotide (CpG) sites, the CpG site with the highest difference in methylation level between healthy and cancerous cells was selected for further validation. A total of 18 mucosal tissue samples were collected from nine healthy controls and nine from OSCC subjects and subjected to microdissection for cell purification, followed by DNA extraction, bisulfite conversion, and pyrosequencing. Additionally, epithelial cells were collected from 2 cohorts including oral rinse from healthy controls, oral rinse and oral swab from OSCC subjects and oral rinse from oropharyngeal squamous cell carcinoma (SCC) were examined for their methylation status using real-time polymerase chain reaction (PCR). Results : Among the 27,578 differentially methylated CpG sites, cg01009664 of the thyrotropin-releasing hormone (TRH) gene showed the greatest difference in methylation level between healthy and cancerous cells. Validation of the TRH gene using pyrosequencing revealed a methylation percentage of 7% ± 3.43% in healthy cells in contrast to 63% ± 19.81% in cancerous cells. Screening of epithelial cells using real-time PCR showed that the DNA methylation level was significantly higher in oral swab and rinse samples collected from OSCC and oropharyngeal SCC subjects than those from healthy controls (p < 0.001). In addition, when using a cutoff at 3.31 ng/μL, the TRH methylation biomarker was able to distinguish OSCC and oropharyngeal SCC subjects from healthy controls with high level of area under the curve, sensitivity and specificity. Conclusion : We demonstrated cg01009664 of TRH as a potential biomarker for OSCC and oropharyngeal SCC screening using oral rinse and swab techniques.en_US
dc.language.isoenen_US
dc.publisherBioMed Central Ltd.en_US
dc.relation.urihttps://doi.org/10.1186/s12885-018-4706-x-
dc.relation.urihttps://bmccancer.biomedcentral.com/articles/10.1186/s12885-018-4706-x-
dc.rights© The Author(s). 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/)en_US
dc.titleTRH site-specific methylation in oral and oropharyngeal squamous cell carcinomaen_US
dc.typeArticleen_US
dc.email.authorNo information provided-
dc.email.authorNo information provided-
dc.email.authorNo information provided-
dc.email.authorNo information provided-
dc.email.authorNo information provided-
dc.email.authorNo information provided-
dc.email.authorVirachai.K@Chula.ac.th-
dc.email.authorApiwat.M@Chula.ac.th-
dc.email.authorNo information provided-
dc.subject.keywordOral canceren_US
dc.subject.keywordDNA methylationen_US
dc.subject.keywordBioinformaticsen_US
dc.subject.keywordPyrosequencingen_US
dc.identifier.DOI10.1186/s12885-018-4706-x-
Appears in Collections:Chula Scholars - 2018

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